2025

Ali A, Liu Z, Ye K, Guan Y, Chen S, Liu T, Guo Z, Wong MK, Vasquez P, Poudel C, Mustonen BC, Eng DG, Pippin JW, Shankland SJ, Wang S, Vaughan JC. Nanoscale Optical Imaging, Reconstruction, and Spatial Analysis of Whole Mouse Glomeruli. Kidney International. 2024 Dec 9.

Hsieh HC, Han Q, Brenes B, Wang R, Wang Y, Poudel C, Vaughan JC, Albritton NL, Liu JTC. Imaging 3D cell cultures with 2D and 3D microscopies. Nature Methods. 2025.

2024

Guo Z*, Poudel C*, Yu J, Wong M, Sarfatis MC, Chiu DT, Vaughan JC. Highly Multiplexed Fluorescence Microscopy with Spectrally Tunable Semiconducting Polymer Dots. Science Advances 10, no. 50 (2024): eadk8829. (journal cover)

Bishop KW, Erion Barner LA, Baraznenok E, Lan L, Poudel C, Brenes D, Serafin RB, True LD, Vaughan JC, Glaser AK, Liu JTC. Axially swept open-top light-sheet microscopy for densely labeled clinical specimens. Optics Letters. 2024 Jul 1;49(13):3794-7.

Bishop KW, Erion Barner LA, Han Q, Baraznenok E, Lan L, Poudel C, Gao G, Serafin RB, Chow SS, Glaser AK, Janowczyk A, Brenes D, Huang H, Miyasato D, True LD, Kang S, Vaughan JC, Liu JTC. An end-to-end workflow for nondestructive 3D pathology. Nature Protocols. 2024 Jan 23:1-27.

2023

Liu JT, Glaser AK, Poudel C, Vaughan JC. Nondestructive 3D pathology with light-sheet fluorescence microscopy for translational research and clinical assays. Annual Review of Analytical Chemistry. 2023 Jun 14;16:231-52.

2022

Laine RF*, Poudel C*, Kaminski CF. A method for the fast and photon-efficient analysis of time-domain fluorescence lifetime image data over large dynamic ranges. Journal of Microscopy. 2022 Sep;287(3):138-147.

Pippin JW, Kaverina N, Wang Y, Eng DG, Zeng Y, Tran U, Loretz CJ, Chang A, Akilesh S, Poudel C, Perry HS, O’Connor C, Vaughan JC, Bitzer M, Wessely O, Shankland SJ. Upregulated PD-1 Signaling is an Important Antagonist to Glomerular Health in Aged Kidneys and Disease. The Journal of Clinical Investigation. 2022 Aug 15;132(16): e156250.

Novo CL, Wong E, Hockings C, Poudel C, Sheekey E, Wiese M, Okkenhaug H, Boulton SJ, Basu S, Walker S, Kaminski Schierle GS, Narlikar GJ, Rugg-Gunn PJ. Satellite repeat transcripts modulate heterochromatin condensates and safeguard chromosome stability in mouse embryonic stem cells. Nature Communications. 2022 Jun 20;13(1):3525.

Collins S, Van Vliet L, Gielen F, Janeček M, Valladolid SW, Poudel C, Fusco G, De Simone A, Michel C, Kaminski CF, Spring DR, Hollfelder F, Kaminski Schierle GS. A unified in vitro to in vivo fluorescence lifetime screening platform yields amyloid β aggregation inhibitors. bioRxiv. 2022 March 28.

2021

Mela I*, Poudel C*, Anaya M, Delport G, Frohna K, Macpherson S, Doherty TA, Scheeder A, Stranks SD, Kaminski CF. Revealing nanomechanical domains and their transient behavior in mixed‐halide perovskite films. Advanced Functional Materials. 2021 Jun;31(23):2100293.

Sdao SM, Ho T, Poudel C, Foster HR, De Leon ER, Adams MT, Lee JH, Blum B, Rane SG, Merrins MJ. CDK2 limits the highly energetic secretory program of mature β cells by restricting PEP cycle-dependent KATP channel closure. Cell reports. 2021 Jan 26;34(4):108690.

Hardenberg MC, Sinnige T, Casford S, Dada ST, Poudel C, Robinson EA, Fuxreiter M, Kaminksi CF, Kaminski Schierle GS, Nollen EAA, Dobson CM, Vendruscolo M. Observation of an α-synuclein liquid droplet state and its maturation into Lewy body-like assemblies. Journal of molecular cell biology. 2021 Apr;13(4):282-94.

Hecker L, Wang W, Mela I, Fathi S, Poudel C, Soavi G, Huang YY, Kaminski CF. Guided Assembly and Patterning of Intrinsically Fluorescent Amyloid Fibers with Long-Range Order. Nano letters. 2021 Jan 15;21(2):938-45.

2020

Hockings C*, Poudel C*, Feeney KA, Novo CL, Hamouda MS, Mela I, Fernandez-Antoran D, Vallejo-Ramirez PP, Rugg-Gunn PJ, Chalut K, Kaminski CF, Kaminski Schierle GS. Illuminating chromatin compaction in live cells and fixed tissues using SiR-DNA fluorescence lifetime. bioRxiv. 2020 Jan 1.

Lewandowski SL, Cardone RL, Foster HR, Ho T, Potapenko E, Poudel C, VanDeusen HR, Sdao SM, Alves TC, Zhao X, Capozzi ME, de Souza AH, Jahan I, Thomas CJ, Nunemaker CS, Davis DB, Campbell JE, Kibbey RG, Merrins MJ. Pyruvate kinase controls signal strength in the insulin secretory pathway. Cell metabolism. 2020 Nov 3;32(5):736-50.

Poudel C, Mela I, Kaminski CF. High-throughput, multi-parametric, and correlative fluorescence lifetime imaging. Methods and Applications in Fluorescence. 2020 Feb 19;8(2):024005.

Perret S, Poudel C, Ghosh AN, Fanjoux G, Provino L, Taunay T, Monteville A, Landais D, Kaminski CF, Dudley JM, Sylvestre T. Silica-based photonic crystal fiber for the generation of broad band UV radiation. OSA Continuum. 2020 Jan 15;3(1):31-42.

2019

Teplensky MH, Fantham M, Poudel C, Hockings C, Lu M, Guna A, Aragones-Anglada M, Moghadam PZ, Li P, Farha OK, de Quirós Fernández SB, Richards FM, Jodrell DI, Kaminski Schierle GS, Kaminski CF, Fairen-Jimenez D. A highly porous metal-organic framework system to deliver payloads for gene knockdown. Chem. 2019 Nov 14;5(11):2926-41.

Laine RF, Sinnige T, Ma KY, Haack AJ, Poudel C, Gaida P, Curry N, Perni M, Nollen EA, Dobson CM, Vendruscolo M, Kaminski Schierle GS, Kaminski CF. Fast fluorescence lifetime imaging reveals the aggregation processes of α-synuclein and polyglutamine in aging Caenorhabditis elegans. ACS chemical biology. 2019 Jun 17;14(7):1628-36.

Huang C, Wagner-Valladolid S, Stephens AD, Jung R, Poudel C, Sinnige T, Lechler MC, Schlörit N, Lu M, Laine RF, Michel CH, Vendruscolo M, Kaminski CF, Kaminski Schierle GS, David DC. Intrinsically aggregation-prone proteins form amyloid-like aggregates and contribute to tissue aging in Caenorhabditis elegans. Elife. 2019 May 3;8:e43059.

Poudel C, Kaminski CF. Supercontinuum radiation in fluorescence microscopy and biomedical imaging applications. JOSA B. 2019 Feb 1;36(2):A139-53.

2018

Cummings NE, Williams EM, Kasza I, Konon EN, Schaid MD, Schmidt BA, Poudel C, Sherman DS, Yu D, Arriola Apelo SI, Cottrell SE, Geiger G, Barnes ME, Wisinski JA, Fenske RJ, Matkowskyj KA, Kimple ME, Alexander CM, Merrins MJ, Lamming DW. Restoration of metabolic health by decreased consumption of branched‐chain amino acids. The Journal of physiology. 2018 Feb 15;596(4):623-45.

2016

Gregg T*, Poudel C*, Schmidt BA, Dhillon RS, Sdao SM, Truchan NA, Baar EL, Fernandez LA, Denu JM, Eliceiri KW, Rogers JD, Kimple ME, Lamming DW, Merrins MJ. Pancreatic β-cells from mice offset age-associated mitochondrial deficiency with reduced KATP channel activity. Diabetes. 2016 Sep 1;65(9):2700-10.

Merrins MJ, Poudel C, McKenna JP, Ha J, Sherman A, Bertram R, Satin LS. Phase analysis of metabolic oscillations and membrane potential in pancreatic islet β-cells. Biophysical journal. 2016 Feb 2;110(3):691-9.